#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01362/HGDP01362.cram --algo AlignmentStat HGDP/HGDP01362/QCmetrics/HGDP01362.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	393237986	393237986	1.000000	0	391847804	0.996465	58458722845	366581829	54980595798	53475606511	0.000000	0.005362	0.004653	0.000214	151.000000	389953499	0.995166	0	0.499893	0.019590	0.000012	
SECOND_OF_PAIR	393237986	393237986	1.000000	0	390006409	0.991782	56810046466	363871935	53530826422	49202289312	0.000000	0.012692	0.011988	0.000202	151.000000	389953499	0.999864	0	0.499541	0.020801	0.003059	
PAIR	786475972	786475972	1.000000	0	781854213	0.994123	115268769311	730453764	108511422220	102677895823	0.000000	0.008975	0.008271	0.000208	151.000000	779906998	0.997509	0	0.499717	0.020194	0.001536