#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01366/HGDP01366.cram --algo AlignmentStat HGDP/HGDP01366/QCmetrics/HGDP01366.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	430245684	430245684	1.000000	0	429114670	0.997371	64108666291	401986362	60371424698	58842473314	0.000000	0.004911	0.004193	0.000221	151.000000	427007000	0.995088	0	0.500072	0.020458	0.000007	
SECOND_OF_PAIR	430245684	430245684	1.000000	0	427053021	0.992579	62274892681	399001283	58790687755	54366791120	0.000000	0.011715	0.011016	0.000208	151.000000	427007000	0.999892	0	0.499441	0.021869	0.002311	
PAIR	860491368	860491368	1.000000	0	856167691	0.994975	126383558972	800987645	119162112453	113209264434	0.000000	0.008264	0.007559	0.000215	151.000000	854014000	0.997484	0	0.499757	0.021162	0.001159