#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01367/HGDP01367.cram --algo AlignmentStat HGDP/HGDP01367/QCmetrics/HGDP01367.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	335690800	335690800	1.000000	0	332431065	0.990289	49675539030	312399009	46912365313	45700650847	0.000000	0.005381	0.004711	0.000220	151.000000	331451834	0.997054	0	0.499936	0.020433	0.000036	
SECOND_OF_PAIR	335690800	335690800	1.000000	0	331544615	0.987649	48714495720	310848118	46088918628	43166026914	0.000000	0.010575	0.009885	0.000207	151.000000	331451834	0.999720	0	0.499605	0.021669	0.009022	
PAIR	671381600	671381600	1.000000	0	663975680	0.988969	98390034750	623247127	93001283941	88866677761	0.000000	0.007953	0.007275	0.000213	151.000000	662903668	0.998385	0	0.499771	0.021050	0.004529