#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01368/HGDP01368.cram --algo AlignmentStat HGDP/HGDP01368/QCmetrics/HGDP01368.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425898116	425898116	1.000000	0	424110942	0.995804	63239720612	397771483	59591596962	57697102416	0.000000	0.005801	0.005147	0.000221	151.000000	422067976	0.995183	0	0.500068	0.019421	0.000013	
SECOND_OF_PAIR	425898116	425898116	1.000000	0	422121084	0.991132	61374326182	394765673	57941862972	53036831086	1.000000	0.013150	0.012498	0.000209	151.000000	422067976	0.999874	0	0.499366	0.020974	0.003903	
PAIR	851796232	851796232	1.000000	0	846232026	0.993468	124614046794	792537156	117533459934	110733933502	0.000000	0.009420	0.008770	0.000215	151.000000	844135952	0.997523	0	0.499718	0.020196	0.001958