#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01371/HGDP01371.cram --algo AlignmentStat HGDP/HGDP01371/QCmetrics/HGDP01371.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377638239	377638239	1.000000	0	375924175	0.995461	56151697253	351660023	52809868378	51366135651	0.000000	0.005501	0.004735	0.000220	151.000000	374490388	0.996186	0	0.500001	0.020898	0.000017	
SECOND_OF_PAIR	377638239	377638239	1.000000	0	374541111	0.991799	54568996570	349394466	51424488669	46895925420	1.000000	0.013696	0.012956	0.000205	151.000000	374490388	0.999865	0	0.499438	0.022272	0.004186	
PAIR	755276478	755276478	1.000000	0	750465286	0.993630	110720693823	701054489	104234357047	98262061071	0.000000	0.009539	0.008791	0.000212	151.000000	748980776	0.998022	0	0.499720	0.021584	0.002101