#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01372/HGDP01372.cram --algo AlignmentStat HGDP/HGDP01372/QCmetrics/HGDP01372.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	416989500	416989500	1.000000	0	416062877	0.997778	62202693967	390015748	58584395932	57086309689	0.000000	0.005048	0.004308	0.000220	151.000000	414873477	0.997141	0	0.500026	0.020003	0.000007	
SECOND_OF_PAIR	416989500	416989500	1.000000	0	414919470	0.995036	60841967044	387981136	57404104834	53338278175	0.000000	0.011150	0.010386	0.000209	151.000000	414873477	0.999889	0	0.499461	0.021349	0.001942	
PAIR	833979000	833979000	1.000000	0	830982347	0.996407	123044661011	777996884	115988500766	110424587864	0.000000	0.008065	0.007316	0.000215	151.000000	829746954	0.998513	0	0.499744	0.020675	0.000974