#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP01372/HGDP01372.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01372/QCmetrics/HGDP01372.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 20.553 24.393 17 3 0 0.068505 0.0017268 0.060872 0.0078982 0.2787 0.4177 0.99925 0.9966 0.95843 0.70997 0.30643 0.098014 0.049158 0.031463 0.02532 0.021523 0.018724 0.016638 0.015087 0.013953 0.99537 23 coverage high_quality_coverage_count 0 17626 1 11572 2 12367 3 15337 4 23374 5 42113 6 77762 7 139916 8 243920 9 398479 10 614725 11 879788 12 1171464 13 1471965 14 1734810 15 1929626 16 2023583 17 2000737 18 1886964 19 1697324 20 1463121 21 1209695 22 959924 23 740126 24 553354 25 403767 26 289222 27 207232 28 147947 29 106602 30 79985 31 62721 32 52210 33 43930 34 38759 35 34171 36 31006 37 28070 38 24757 39 22635 40 20283 41 18708 42 16865 43 15389 44 14754 45 13220 46 12426 47 11766 48 11014 49 10773 50 10168 51 9913 52 9620 53 9314 54 9156 55 8816 56 8583 57 8416 58 7951 59 7813 60 7606 61 7477 62 7245 63 6919 64 6627 65 6422 66 6178 67 6082 68 5889 69 5717 70 5728 71 5385 72 5446 73 5126 74 4964 75 4822 76 4627 77 4529 78 4424 79 4252 80 4098 81 4019 82 3983 83 3764 84 3766 85 3680 86 3531 87 3342 88 3298 89 3172 90 3084 91 2884 92 2997 93 2741 94 2699 95 2671 96 2492 97 2465 98 2378 99 2402 100 2292 101 2269 102 2201 103 2125 104 2109 105 2016 106 2107 107 1927 108 1998 109 1951 110 1862 111 1819 112 1879 113 1813 114 1774 115 1762 116 1741 117 1711 118 1684 119 1611 120 1573 121 1646 122 1558 123 1581 124 1538 125 1453 126 1504 127 1399 128 1447 129 1398 130 1404 131 1328 132 1342 133 1298 134 1277 135 1257 136 1293 137 1284 138 1230 139 1220 140 1206 141 1167 142 1173 143 1187 144 1092 145 1146 146 1126 147 1110 148 1105 149 1110 150 1050 151 1065 152 1040 153 1032 154 971 155 1037 156 1042 157 999 158 987 159 995 160 1021 161 927 162 911 163 942 164 954 165 984 166 940 167 952 168 914 169 895 170 883 171 925 172 922 173 828 174 909 175 844 176 907 177 848 178 852 179 851 180 832 181 832 182 824 183 813 184 795 185 806 186 770 187 769 188 765 189 756 190 777 191 756 192 714 193 801 194 742 195 717 196 702 197 743 198 669 199 704 200 696 201 696 202 646 203 653 204 623 205 649 206 646 207 584 208 612 209 581 210 585 211 618 212 591 213 595 214 564 215 572 216 587 217 564 218 527 219 519 220 499 221 487 222 497 223 508 224 485 225 470 226 456 227 434 228 439 229 466 230 432 231 410 232 435 233 424 234 416 235 394 236 421 237 420 238 395 239 417 240 390 241 393 242 370 243 376 244 385 245 348 246 374 247 360 248 402 249 351 250 183211