#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01374/HGDP01374.cram --algo AlignmentStat HGDP/HGDP01374/QCmetrics/HGDP01374.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	336519716	336519716	1.000000	0	335973550	0.998377	50206089495	314159873	47178959409	45963470505	0.000000	0.005091	0.004326	0.000219	151.000000	334303179	0.995028	0	0.499961	0.020700	0.000004	
SECOND_OF_PAIR	336519716	336519716	1.000000	0	334331135	0.993496	48788431699	311787828	45946463201	42480670023	0.000000	0.011837	0.011069	0.000207	151.000000	334303179	0.999916	0	0.499488	0.022103	0.001375	
PAIR	673039432	673039432	1.000000	0	670304685	0.995937	98994521194	625947701	93125422610	88444140528	0.000000	0.008415	0.007652	0.000213	151.000000	668606358	0.997466	0	0.499725	0.021400	0.000690