#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01375/HGDP01375.cram --algo AlignmentStat HGDP/HGDP01375/QCmetrics/HGDP01375.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	418458425	418458425	1.000000	0	414013714	0.989378	61878345531	387484794	58192050773	56708672440	0.000000	0.005359	0.004613	0.000218	151.000000	412635971	0.996672	0	0.499980	0.020769	0.000034	
SECOND_OF_PAIR	418458425	418458425	1.000000	0	412744616	0.986346	60609918333	385398118	57105995462	53313382816	0.000000	0.011053	0.010284	0.000205	151.000000	412635971	0.999737	0	0.499529	0.021924	0.010075	
PAIR	836916850	836916850	1.000000	0	826758330	0.987862	122488263864	772882912	115298046235	110022055256	0.000000	0.008176	0.007422	0.000212	151.000000	825271942	0.998202	0	0.499755	0.021346	0.005055