#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01376/HGDP01376.cram --algo AlignmentStat HGDP/HGDP01376/QCmetrics/HGDP01376.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	416146786	416146786	1.000000	0	414679967	0.996475	61804311346	388640987	58222157363	56371793004	0.000000	0.005965	0.005229	0.000221	151.000000	412565978	0.994902	0	0.500013	0.020597	0.000010	
SECOND_OF_PAIR	416146786	416146786	1.000000	0	412621294	0.991528	59893500452	385557475	56528367310	51598730012	1.000000	0.013662	0.012951	0.000208	151.000000	412565978	0.999866	0	0.499370	0.021925	0.003146	
PAIR	832293572	832293572	1.000000	0	827301261	0.994002	121697811798	774198462	114750524673	107970523016	0.000000	0.009753	0.009032	0.000215	151.000000	825131956	0.997378	0	0.499693	0.021259	0.001578