#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01377/HGDP01377.cram --algo AlignmentStat HGDP/HGDP01377/QCmetrics/HGDP01377.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	401264916	401264916	1.000000	0	399869410	0.996522	59775125654	375312898	56355907527	54769521061	0.000000	0.005761	0.005060	0.000215	151.000000	398317823	0.996120	0	0.499928	0.019285	0.000011	
SECOND_OF_PAIR	401264916	401264916	1.000000	0	398368895	0.992783	58334509011	372962945	55090731333	50994976451	0.000000	0.012221	0.011500	0.000203	151.000000	398317823	0.999872	0	0.499527	0.020559	0.003075	
PAIR	802529832	802529832	1.000000	0	798238305	0.994653	118109634665	748275843	111446638860	105764497512	0.000000	0.008951	0.008244	0.000209	151.000000	796635646	0.997992	0	0.499728	0.019921	0.001543