#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01386/HGDP01386.cram --algo AlignmentStat HGDP/HGDP01386/QCmetrics/HGDP01386.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	395354187	395354187	1.000000	0	395037466	0.999199	58987621535	369916156	55554693117	54139595127	0.000000	0.005146	0.004422	0.000219	151.000000	392879838	0.994538	0	0.499991	0.020620	0.000002	
SECOND_OF_PAIR	395354187	395354187	1.000000	0	392904899	0.993805	57136235711	366798490	53925632728	49355092110	1.000000	0.013454	0.012773	0.000205	151.000000	392879838	0.999936	0	0.499457	0.022123	0.000603	
PAIR	790708374	790708374	1.000000	0	787942365	0.996502	116123857246	736714646	109480325845	103494687237	0.000000	0.009233	0.008535	0.000212	151.000000	785759676	0.997230	0	0.499725	0.021370	0.000303