#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01396/HGDP01396.cram --algo AlignmentStat HGDP/HGDP01396/QCmetrics/HGDP01396.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	315693325	315693325	1.000000	0	315174999	0.998358	47166137151	295030680	44295626507	42458248308	0.000000	0.004734	0.004091	0.000205	151.000000	314995051	0.999429	0	0.499192	0.017919	0.000077	
SECOND_OF_PAIR	315693325	315693325	1.000000	0	315016308	0.997855	46973960242	294643627	44104987964	41521685785	0.000000	0.006666	0.006028	0.000199	151.000000	314995051	0.999933	0	0.499161	0.018388	0.000072	
PAIR	631386650	631386650	1.000000	0	630191307	0.998107	94140097393	589674307	88400614471	83979934093	0.000000	0.005698	0.005057	0.000202	151.000000	629990102	0.999681	0	0.499176	0.018153	0.000074