#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01397/HGDP01397.cram --algo AlignmentStat HGDP/HGDP01397/QCmetrics/HGDP01397.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	421249800	421249800	1.000000	0	420161059	0.997415	62699037270	391079424	58684841816	57072230313	0.000000	0.005514	0.004732	0.000219	151.000000	417877643	0.994565	0	0.499939	0.020773	0.000008	
SECOND_OF_PAIR	421249800	421249800	1.000000	0	417920187	0.992096	60821676825	387827034	57042355470	52139387195	1.000000	0.013699	0.012929	0.000204	151.000000	417877643	0.999898	0	0.499404	0.021968	0.002286	
PAIR	842499600	842499600	1.000000	0	838081246	0.994756	123520714095	778906458	115727197286	109211617508	0.000000	0.009544	0.008772	0.000211	151.000000	835755286	0.997225	0	0.499672	0.021369	0.001147