#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01400/HGDP01400.cram --algo AlignmentStat HGDP/HGDP01400/QCmetrics/HGDP01400.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	394059524	394059524	1.000000	0	393672292	0.999017	58687802648	369427276	55382929648	53749244791	0.000000	0.005647	0.004967	0.000218	151.000000	391518819	0.994530	0	0.499966	0.019968	0.000003	
SECOND_OF_PAIR	394059524	394059524	1.000000	0	391558358	0.993653	56895926709	366421199	53779947986	49060534589	1.000000	0.013939	0.013294	0.000206	151.000000	391518819	0.999899	0	0.499547	0.021448	0.000618	
PAIR	788119048	788119048	1.000000	0	785230650	0.996335	115583729357	735848475	109162877634	102809779380	0.000000	0.009728	0.009069	0.000212	151.000000	783037638	0.997207	0	0.499757	0.020706	0.000311