#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01403/HGDP01403.cram --algo AlignmentStat HGDP/HGDP01403/QCmetrics/HGDP01403.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	403626175	403626175	1.000000	0	403157030	0.998838	60239280404	377805129	56749591988	55397295300	0.000000	0.005060	0.004325	0.000217	151.000000	401012594	0.994681	0	0.499832	0.019768	0.000003	
SECOND_OF_PAIR	403626175	403626175	1.000000	0	401043438	0.993601	58469068282	374699047	55178281466	50452288112	1.000000	0.013706	0.012988	0.000203	151.000000	401012594	0.999923	0	0.499635	0.021108	0.000867	
PAIR	807252350	807252350	1.000000	0	804200468	0.996219	118708348686	752504176	111927873454	105849583412	0.000000	0.009318	0.008595	0.000210	151.000000	802025188	0.997295	0	0.499734	0.020436	0.000435