#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01404/HGDP01404.cram --algo AlignmentStat HGDP/HGDP01404/QCmetrics/HGDP01404.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371487360	371487360	1.000000	0	368880517	0.992983	55103474604	343620824	51607506009	50312923301	0.000000	0.005189	0.004423	0.000216	151.000000	367135212	0.995269	0	0.499858	0.020013	0.000027	
SECOND_OF_PAIR	371487360	371487360	1.000000	0	367195728	0.988447	53504097064	341055795	50225003559	46124222482	1.000000	0.013063	0.012308	0.000203	151.000000	367135212	0.999835	0	0.499528	0.021300	0.006562	
PAIR	742974720	742974720	1.000000	0	736076245	0.990715	108607571668	684676619	101832509568	96437145783	0.000000	0.009067	0.008312	0.000210	151.000000	734270424	0.997547	0	0.499693	0.020655	0.003294