#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01405/HGDP01405.cram --algo AlignmentStat HGDP/HGDP01405/QCmetrics/HGDP01405.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355253171	355253171	1.000000	0	355005162	0.999302	52975372993	331751053	49700168788	47874734467	0.000000	0.005068	0.004366	0.000232	151.000000	352954002	0.994222	0	0.497795	0.021209	0.000057	
SECOND_OF_PAIR	355253171	355253171	1.000000	0	352972036	0.993579	52538610025	329680549	49282464671	46837220532	0.000000	0.006307	0.005593	0.000229	151.000000	352954002	0.999949	0	0.497905	0.021756	0.000054	
PAIR	710506342	710506342	1.000000	0	707977198	0.996440	105513983018	661431602	98982633459	94711954999	0.000000	0.005685	0.004977	0.000231	151.000000	705908004	0.997077	0	0.497850	0.021482	0.000055