#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01406/HGDP01406.cram --algo AlignmentStat HGDP/HGDP01406/QCmetrics/HGDP01406.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	357025559	357025559	1.000000	0	356780027	0.999312	53225932642	332497688	49809708399	48000026320	0.000000	0.004994	0.004275	0.000239	151.000000	348413439	0.976550	0	0.497913	0.023324	0.000047	
SECOND_OF_PAIR	357025559	357025559	1.000000	0	348429502	0.975923	51279353914	323974502	47980594060	45350469617	0.000000	0.007524	0.006762	0.000238	151.000000	348413439	0.999954	0	0.497960	0.024210	0.000044	
PAIR	714051118	714051118	1.000000	0	705209529	0.987618	104505286556	656472190	97790302459	93350495937	0.000000	0.006235	0.005495	0.000238	151.000000	696826878	0.988113	0	0.497936	0.023763	0.000046