#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01408/HGDP01408.cram --algo AlignmentStat HGDP/HGDP01408/QCmetrics/HGDP01408.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363613586	363613586	1.000000	0	363269748	0.999054	54180535559	338396192	50674087793	48830023972	0.000000	0.005213	0.004471	0.000238	151.000000	356083766	0.980219	0	0.498396	0.021961	0.000254	
SECOND_OF_PAIR	363613586	363613586	1.000000	0	356106199	0.979353	52475003138	331107292	49076888679	46240106517	0.000000	0.007698	0.006926	0.000236	151.000000	356083766	0.999937	0	0.498200	0.022733	0.000236	
PAIR	727227172	727227172	1.000000	0	719375947	0.989204	106655538697	669503484	99750976472	95070130489	0.000000	0.006436	0.005679	0.000237	151.000000	712167532	0.989980	0	0.498299	0.022344	0.000245