#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01411/HGDP01411.cram --algo AlignmentStat HGDP/HGDP01411/QCmetrics/HGDP01411.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368934713	368934713	1.000000	0	368503379	0.998831	54992607848	343785182	51508399248	49771372420	0.000000	0.004842	0.004122	0.000237	151.000000	366128305	0.993555	0	0.498655	0.020171	0.000508	
SECOND_OF_PAIR	368934713	368934713	1.000000	0	366155270	0.992466	54406212518	341358504	50954431830	48401884034	0.000000	0.006679	0.005948	0.000234	151.000000	366128305	0.999926	0	0.498737	0.020596	0.000485	
PAIR	737869426	737869426	1.000000	0	734658649	0.995649	109398820366	685143686	102462831078	98173256454	0.000000	0.005755	0.005030	0.000236	151.000000	732256610	0.996730	0	0.498696	0.020383	0.000496