#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01412/HGDP01412.cram --algo AlignmentStat HGDP/HGDP01412/QCmetrics/HGDP01412.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355957978	355957978	1.000000	0	355362452	0.998327	52887074199	332712026	49699192041	47869853099	0.000000	0.005947	0.005278	0.000234	151.000000	353111316	0.993665	0	0.498965	0.018445	0.000961	
SECOND_OF_PAIR	355957978	355957978	1.000000	0	353148496	0.992107	52395797350	330485450	49235311904	46772247259	0.000000	0.007594	0.006917	0.000232	151.000000	353111316	0.999895	0	0.499095	0.018918	0.000908	
PAIR	711915956	711915956	1.000000	0	708510948	0.995217	105282871549	663197476	98934503945	94642100358	0.000000	0.006767	0.006093	0.000233	151.000000	706222632	0.996770	0	0.499030	0.018681	0.000935