#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01413/HGDP01413.cram --algo AlignmentStat HGDP/HGDP01413/QCmetrics/HGDP01413.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380988993	380988993	1.000000	0	380567652	0.998894	56730891578	355750073	53231403719	51328989931	0.000000	0.005151	0.004450	0.000235	151.000000	378037375	0.993351	0	0.496103	0.023365	0.000132	
SECOND_OF_PAIR	380988993	380988993	1.000000	0	378059036	0.992310	56150257532	353257192	52697803212	49407243810	0.000000	0.007736	0.007044	0.000227	151.000000	378037375	0.999943	0	0.496502	0.023959	0.000126	
PAIR	761977986	761977986	1.000000	0	758626688	0.995602	112881149110	709007265	105929206931	100736233741	0.000000	0.006437	0.005740	0.000231	151.000000	756074750	0.996636	0	0.496302	0.023662	0.000129