#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01415/HGDP01415.cram --algo AlignmentStat HGDP/HGDP01415/QCmetrics/HGDP01415.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	342656422	342656422	1.000000	0	341928091	0.997874	50937763032	317710892	47525749221	45361802487	0.000000	0.006029	0.005274	0.000233	151.000000	339815608	0.993822	0	0.497313	0.023005	0.001377	
SECOND_OF_PAIR	342656422	342656422	1.000000	0	339861719	0.991844	49933649554	315363187	46576996721	42928322065	1.000000	0.013043	0.012315	0.000228	151.000000	339815608	0.999864	0	0.497719	0.023556	0.001300	
PAIR	685312844	685312844	1.000000	0	681789810	0.994859	100871412586	633074079	94102745942	88290124552	1.000000	0.009501	0.008759	0.000230	151.000000	679631216	0.996834	0	0.497515	0.023280	0.001338