#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01418/HGDP01418.cram --algo AlignmentStat HGDP/HGDP01418/QCmetrics/HGDP01418.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	343190238	343190238	1.000000	0	342707609	0.998594	51127889981	319529232	47849933581	45414436786	0.000000	0.006804	0.006090	0.000230	151.000000	341362549	0.996075	0	0.497337	0.021168	0.000526	
SECOND_OF_PAIR	343190238	343190238	1.000000	0	341393048	0.994763	50806593042	318277242	47559641333	44356903832	1.000000	0.011295	0.010607	0.000222	151.000000	341362549	0.999911	0	0.497584	0.021626	0.000501	
PAIR	686380476	686380476	1.000000	0	684100657	0.996678	101934483023	637806474	95409574914	89771340618	1.000000	0.009043	0.008341	0.000226	151.000000	682725098	0.997989	0	0.497460	0.021397	0.000513