#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01419/HGDP01419.cram --algo AlignmentStat HGDP/HGDP01419/QCmetrics/HGDP01419.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	336893425	336893425	1.000000	0	336634913	0.999233	50203989889	313500326	46953538130	44579103047	0.000000	0.006173	0.005459	0.000231	151.000000	335112011	0.995476	0	0.497035	0.022833	0.000077	
SECOND_OF_PAIR	336893425	336893425	1.000000	0	335131350	0.994770	49782398048	312006278	46568219131	43337537275	1.000000	0.011261	0.010578	0.000225	151.000000	335112011	0.999942	0	0.497135	0.023272	0.000073	
PAIR	673786850	673786850	1.000000	0	671766263	0.997001	99986387937	625506604	93521757261	87916640322	1.000000	0.008706	0.008008	0.000228	151.000000	670224022	0.997704	0	0.497085	0.023052	0.000075