#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00121/KPGP-00121.cram --algo AlignmentStat KPGP/KPGP-00121/QCmetrics/KPGP-00121.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	663811701	663811701	1.000000	0	663172452	0.999037	58816271054	604620610	53810273501	50065583653	0.000000	0.005792	0.005080	0.000200	90.000000	659396625	0.994306	0	0.500189	0.024720	0.000000	
SECOND_OF_PAIR	663811701	663811701	1.000000	0	659497742	0.993501	58133189647	601049523	53171640700	48365298909	0.000000	0.008771	0.008134	0.000197	90.000000	659396625	0.999847	0	0.499897	0.024871	0.000001	
PAIR	1327623402	1327623402	1.000000	0	1322670194	0.996269	116949460701	1205670133	106981914201	98430882562	0.000000	0.007273	0.006598	0.000199	90.000000	1318793250	0.997069	0	0.500044	0.024795	0.000000