#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00131/KPGP-00131.cram --algo AlignmentStat KPGP/KPGP-00131/QCmetrics/KPGP-00131.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	667460163	667460163	1.000000	0	666957142	0.999246	59385590252	611281593	54606014441	51156361816	0.000000	0.005454	0.004707	0.000197	90.000000	662763744	0.993713	0	0.500386	0.026863	0.000000	
SECOND_OF_PAIR	667460163	667460163	1.000000	0	662868725	0.993121	58688134126	607301606	53970064458	49554526479	0.000000	0.007609	0.006914	0.000197	90.000000	662763744	0.999842	0	0.499798	0.027128	0.000000	
PAIR	1334920326	1334920326	1.000000	0	1329825867	0.996184	118073724378	1218583199	108576078899	100710888295	0.000000	0.006525	0.005804	0.000197	90.000000	1325527488	0.996768	0	0.500093	0.026995	0.000000