#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00136/KPGP-00136.cram --algo AlignmentStat KPGP/KPGP-00136/QCmetrics/KPGP-00136.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	638803833	638803833	1.000000	0	638171099	0.999010	56343566315	573518108	50878393801	46844094874	0.000000	0.006874	0.005929	0.000220	90.000000	634064637	0.993565	0	0.500258	0.029136	0.000000	
SECOND_OF_PAIR	638803833	638803833	1.000000	0	634169324	0.992745	55613449556	569732921	50199842561	45353762377	0.000000	0.008972	0.008123	0.000246	90.000000	634064637	0.999835	0	0.499874	0.029295	0.000001	
PAIR	1277607666	1277607666	1.000000	0	1272340423	0.995877	111957015871	1143251029	101078236362	92197857251	0.000000	0.007916	0.007018	0.000233	90.000000	1268129274	0.996690	0	0.500067	0.029215	0.000001