#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00145/KPGP-00145.cram --algo AlignmentStat KPGP/KPGP-00145/QCmetrics/KPGP-00145.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	621454491	621454491	1.000000	0	621011138	0.999287	55348272733	566590300	50650818285	48117975203	0.000000	0.004677	0.003951	0.000197	90.000000	617944105	0.995061	0	0.500197	0.022390	0.000000	
SECOND_OF_PAIR	621454491	621454491	1.000000	0	618014821	0.994465	54740239904	563488137	50078964915	46385520881	0.000000	0.006995	0.006338	0.000195	90.000000	617944105	0.999886	0	0.499954	0.022519	0.000000	
PAIR	1242908982	1242908982	1.000000	0	1239025959	0.996876	110088512637	1130078437	100729783200	94503496084	0.000000	0.005829	0.005137	0.000196	90.000000	1235888210	0.997468	0	0.500076	0.022454	0.000000