#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00205/KPGP-00205.cram --algo AlignmentStat KPGP/KPGP-00205/QCmetrics/KPGP-00205.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	621657617	621657617	1.000000	0	615252779	0.989697	60743055122	569267351	56365364277	54693558442	0.000000	0.003885	0.003184	0.000207	99.600999	612635703	0.995746	0	0.500546	0.073244	0.000003	
SECOND_OF_PAIR	621657617	621657617	1.000000	0	613387363	0.986696	60221827372	566409241	55846530483	52868486827	0.000000	0.005077	0.004377	0.000205	99.600999	612635703	0.998775	0	0.499629	0.075163	0.000029	
PAIR	1243315234	1243315234	1.000000	0	1228640142	0.988197	120964882494	1135676592	112211894760	107562045269	0.000000	0.004478	0.003778	0.000206	99.600999	1225271406	0.997258	0	0.500088	0.074203	0.000016