#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00317/KPGP-00317.cram --algo AlignmentStat KPGP/KPGP-00317/QCmetrics/KPGP-00317.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	413407654	413407654	1.000000	0	366303870	0.886060	44587887638	337706249	41500848111	40120401290	0.000000	0.003329	0.002596	0.000212	124.665534	364090354	0.993957	0	0.500513	0.063120	0.000003	
SECOND_OF_PAIR	413407654	413407654	1.000000	0	365781867	0.884797	43948516233	336543976	40871081020	38739424378	0.000000	0.004699	0.003963	0.000224	124.665534	364090354	0.995376	0	0.499399	0.080386	0.001127	
PAIR	826815308	826815308	1.000000	0	732085737	0.885428	88536403871	674250225	82371929131	78859825668	0.000000	0.004009	0.003274	0.000218	124.665534	728180708	0.994666	0	0.499956	0.071746	0.000565