#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00318/KPGP-00318.cram --algo AlignmentStat KPGP/KPGP-00318/QCmetrics/KPGP-00318.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	408476895	408476895	1.000000	0	394207060	0.965066	48652424417	367284027	45485952939	43911447581	0.000000	0.003456	0.002661	0.000222	124.616431	392667665	0.996095	0	0.500500	0.047019	0.000005	
SECOND_OF_PAIR	408476895	408476895	1.000000	0	393054745	0.962245	48244647142	365715587	45078980822	42668517527	0.000000	0.004818	0.004022	0.000229	124.616431	392667665	0.999015	0	0.499400	0.052512	0.000707	
PAIR	816953790	816953790	1.000000	0	787261805	0.963655	96897071559	732999614	90564933761	86579965108	0.000000	0.004134	0.003339	0.000226	124.616431	785335330	0.997553	0	0.499951	0.049762	0.000356