#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00319/KPGP-00319.cram --algo AlignmentStat KPGP/KPGP-00319/QCmetrics/KPGP-00319.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	405186305	405186305	1.000000	0	396789231	0.979276	48655160485	367516506	45291941790	43846322186	0.000000	0.003400	0.002586	0.000218	124.582120	395568635	0.996924	0	0.500559	0.066373	0.000002	
SECOND_OF_PAIR	405186305	405186305	1.000000	0	396002420	0.977334	47851174829	365930970	44498727738	42178248030	0.000000	0.004900	0.004075	0.000231	124.582120	395568635	0.998905	0	0.499322	0.085753	0.000633	
PAIR	810372610	810372610	1.000000	0	792791651	0.978305	96506335314	733447476	89790669528	86024570216	0.000000	0.004144	0.003324	0.000224	124.582120	791137270	0.997913	0	0.499941	0.076054	0.000317