#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00321/KPGP-00321.cram --algo AlignmentStat KPGP/KPGP-00321/QCmetrics/KPGP-00321.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409714774	409714774	1.000000	0	409288844	0.998960	60947749280	381766042	57079106736	56498173369	0.000000	0.003292	0.002494	0.000249	150.000000	408129432	0.997167	0	0.499891	0.020450	0.000002	
SECOND_OF_PAIR	409714774	409714774	1.000000	0	408152882	0.996188	60234334547	380002204	56504297361	54933141326	0.000000	0.006349	0.005469	0.000241	150.000000	408129432	0.999943	0	0.499619	0.020924	0.000919	
PAIR	819429548	819429548	1.000000	0	817441726	0.997574	121182083827	761768246	113583404097	111431314695	0.000000	0.004812	0.003974	0.000245	150.000000	816258864	0.998553	0	0.499755	0.020686	0.000461