#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00325/KPGP-00325.cram --algo AlignmentStat KPGP/KPGP-00325/QCmetrics/KPGP-00325.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	360594048	360594048	1.000000	0	360507973	0.999761	53728896810	335131030	50233489498	48606372252	0.000000	0.005199	0.004375	0.000199	151.000000	358461734	0.994324	0	0.500414	0.025200	0.000000	
SECOND_OF_PAIR	360594048	360594048	1.000000	0	358481785	0.994142	52125776054	332215795	48797099146	42576922279	1.000000	0.017345	0.016611	0.000176	151.000000	358461734	0.999944	0	0.499548	0.024836	0.000023	
PAIR	721188096	721188096	1.000000	0	718989758	0.996952	105854672864	667346825	99030588644	91183294531	0.000000	0.011179	0.010403	0.000188	151.000000	716923468	0.997126	0	0.499982	0.025018	0.000011