#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00326/KPGP-00326.cram --algo AlignmentStat KPGP/KPGP-00326/QCmetrics/KPGP-00326.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	311385698	311385698	1.000000	0	310889506	0.998407	46239595415	288043956	43133858261	41508587126	0.000000	0.006262	0.005362	0.000204	151.000000	308837308	0.993399	0	0.500666	0.028680	0.000000	
SECOND_OF_PAIR	311385698	311385698	1.000000	0	308863367	0.991900	44663406339	285149265	41724656378	36183818910	1.000000	0.019833	0.019075	0.000182	151.000000	308837308	0.999916	0	0.499395	0.028440	0.000051	
PAIR	622771396	622771396	1.000000	0	619752873	0.995153	90903001754	573193221	84858514639	77692406036	0.000000	0.012928	0.012103	0.000193	151.000000	617674616	0.996647	0	0.500033	0.028560	0.000026