#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00347/KPGP-00347.cram --algo AlignmentStat KPGP/KPGP-00347/QCmetrics/KPGP-00347.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	491469181	491469181	1.000000	0	491016257	0.999078	73016055906	458610727	68462481162	67002049615	0.000000	0.005084	0.004285	0.000247	150.000000	488126680	0.994115	0	0.499236	0.022758	0.000003	
SECOND_OF_PAIR	491469181	491469181	1.000000	0	488151340	0.993249	70762117818	454754001	66411312176	60902698173	1.000000	0.014470	0.013691	0.000228	150.000000	488126680	0.999949	0	0.499188	0.023302	0.000710	
PAIR	982938362	982938362	1.000000	0	979167597	0.996164	143778173724	913364728	134873793338	127904747788	0.000000	0.009703	0.008916	0.000238	150.000000	976253360	0.997024	0	0.499212	0.023029	0.000357