#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i KPGP/KPGP-00348/KPGP-00348.cram --algo AlignmentStat KPGP/KPGP-00348/QCmetrics/KPGP-00348.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	485029742	485029742	1.000000	0	483715199	0.997290	71919406758	454346070	67827219739	65960726230	0.000000	0.005210	0.004522	0.000246	150.000000	481596053	0.995619	0	0.498961	0.020232	0.000007	
SECOND_OF_PAIR	485029742	485029742	1.000000	0	481638563	0.993008	69969824194	451249933	66077007233	59490722697	1.000000	0.015553	0.014903	0.000228	150.000000	481596053	0.999912	0	0.498671	0.020628	0.002448	
PAIR	970059484	970059484	1.000000	0	965353762	0.995149	141889230952	905596003	133904226972	125451448927	0.000000	0.010310	0.009644	0.000237	150.000000	963192106	0.997761	0	0.498816	0.020430	0.001227