#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_A09.hs38DH/LP6005441-DNA_A09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_A09.hs38DH/QCmetrics/LP6005441-DNA_A09.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 38.13 12.163 38 5 0 0.024667 0.0039059 0.056322 0.0038175 0.012887 0.1016 0.99907 0.99694 0.99432 0.99017 0.97981 0.94631 0.84921 0.40846 0.077852 0.012511 0.0066136 0.0050617 0.0041047 0.0034306 0.99794 27 coverage high_quality_coverage_count 0 2553935 1 1593837 2 1487419 3 1418417 4 1367648 5 1347914 6 1360870 7 1405233 8 1475302 9 1584560 10 1732922 11 1932824 12 2201040 13 2550633 14 3006960 15 3590884 16 4363828 17 5374206 18 6693008 19 8433154 20 10719424 21 13676339 22 17451343 23 22204765 24 28020613 25 34985807 26 43168399 27 52427963 28 62650944 29 73598863 30 84915004 31 96160023 32 106956789 33 116780261 34 125224064 35 131834102 36 136373093 37 138584951 38 138424912 39 135891907 40 131183476 41 124548617 42 116349225 43 107025328 44 96949746 45 86499088 46 76056086 47 65943850 48 56382483 49 47568191 50 39594600 51 32560720 52 26463117 53 21255092 54 16891417 55 13305370 56 10394257 57 8066984 58 6226989 59 4796875 60 3696226 61 2856886 62 2229239 63 1756643 64 1407819 65 1148223 66 957034 67 815091 68 709255 69 629464 70 568321 71 520013 72 481873 73 452228 74 424279 75 401748 76 380347 77 362055 78 345107 79 328520 80 314374 81 300261 82 287332 83 275937 84 265000 85 254472 86 244819 87 237220 88 229611 89 220871 90 213299 91 206099 92 199830 93 192554 94 186582 95 181199 96 175007 97 170264 98 165937 99 161430 100 156375 101 152622 102 148386 103 145336 104 141359 105 138127 106 134665 107 131913 108 128039 109 125236 110 121673 111 119049 112 115651 113 112756 114 110473 115 107832 116 105303 117 103039 118 101035 119 98271 120 96380 121 93931 122 91620 123 89421 124 86996 125 84786 126 82945 127 81104 128 79207 129 76761 130 74706 131 72552 132 71696 133 70250 134 68478 135 66455 136 64716 137 64102 138 62236 139 61122 140 59976 141 59357 142 57793 143 56790 144 55568 145 54432 146 53832 147 53127 148 52195 149 50744 150 49993 151 49256 152 48031 153 48083 154 47114 155 46385 156 45424 157 44934 158 43918 159 43363 160 42816 161 41764 162 41212 163 40137 164 39562 165 38911 166 38427 167 37490 168 36922 169 36617 170 36165 171 35521 172 35159 173 34839 174 34592 175 33662 176 33360 177 32703 178 32310 179 31956 180 31459 181 31100 182 30331 183 30324 184 30083 185 29319 186 29090 187 28252 188 28083 189 27380 190 27292 191 26604 192 26653 193 25823 194 25708 195 25280 196 25231 197 24969 198 24764 199 24343 200 23784 201 23947 202 23596 203 23389 204 22887 205 22502 206 21980 207 21858 208 21614 209 21441 210 20838 211 20686 212 20494 213 20263 214 20043 215 19812 216 19663 217 19373 218 19190 219 19000 220 19088 221 18467 222 18203 223 18039 224 17787 225 17652 226 17169 227 16948 228 16731 229 16213 230 16317 231 15672 232 15644 233 15560 234 15186 235 15075 236 14919 237 14851 238 14604 239 14444 240 13974 241 13908 242 13828 243 13723 244 13652 245 13321 246 13135 247 13201 248 13035 249 12702 250 2194704