#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_A09.hs38DH/LP6005441-DNA_A09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_A09.hs38DH/QCmetrics/LP6005441-DNA_A09.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 19.852 24.927 16 4 0 0.049844 0.0031377 0.047055 0.0070086 0.30421 0.41126 0.99797 0.97251 0.87425 0.6268 0.29158 0.11343 0.062954 0.03965 0.030459 0.024568 0.019604 0.016362 0.014632 0.013614 0.98015 17 coverage high_quality_coverage_count 0 47900 1 62264 2 107921 3 178259 4 253530 5 323578 6 382729 7 447970 8 530184 9 638030 10 785606 11 974697 12 1174881 13 1375596 14 1538045 15 1650803 16 1686117 17 1650788 18 1543255 19 1392365 20 1209692 21 1012540 22 825743 23 654556 24 508236 25 389345 26 293155 27 218811 28 164564 29 127194 30 100443 31 82054 32 67430 33 57979 34 51561 35 45770 36 41758 37 37479 38 34499 39 31857 40 29593 41 27032 42 25535 43 23727 44 21891 45 20192 46 18628 47 17696 48 16865 49 16078 50 15214 51 14851 52 14430 53 14113 54 14009 55 13518 56 13518 57 13198 58 13257 59 13128 60 13173 61 12940 62 12725 63 12472 64 11945 65 11574 66 11314 67 10826 68 10362 69 10006 70 9633 71 9322 72 8875 73 8333 74 7899 75 7423 76 6927 77 6485 78 6126 79 5594 80 5314 81 4989 82 4659 83 4300 84 4055 85 3832 86 3792 87 3555 88 3320 89 3072 90 3005 91 2912 92 2752 93 2529 94 2378 95 2218 96 2277 97 2096 98 2060 99 1841 100 1909 101 1790 102 1721 103 1745 104 1737 105 1654 106 1695 107 1536 108 1619 109 1550 110 1598 111 1576 112 1560 113 1594 114 1501 115 1509 116 1402 117 1364 118 1457 119 1354 120 1432 121 1443 122 1379 123 1416 124 1339 125 1362 126 1362 127 1384 128 1266 129 1247 130 1251 131 1220 132 1210 133 1273 134 1210 135 1168 136 1171 137 1153 138 1112 139 1216 140 1133 141 1076 142 1151 143 1063 144 1090 145 1057 146 1104 147 1051 148 1061 149 997 150 1030 151 1011 152 1035 153 1022 154 1051 155 1085 156 1077 157 1080 158 1170 159 1133 160 1072 161 1096 162 1107 163 1061 164 1031 165 1141 166 1031 167 1060 168 1057 169 1017 170 1006 171 1061 172 976 173 1016 174 1005 175 925 176 945 177 976 178 922 179 896 180 815 181 798 182 867 183 808 184 804 185 863 186 788 187 768 188 804 189 759 190 794 191 805 192 723 193 798 194 774 195 786 196 747 197 742 198 685 199 750 200 708 201 687 202 716 203 636 204 635 205 625 206 577 207 578 208 566 209 584 210 578 211 612 212 549 213 588 214 602 215 600 216 569 217 609 218 585 219 574 220 566 221 599 222 606 223 524 224 573 225 565 226 532 227 511 228 485 229 552 230 509 231 492 232 457 233 457 234 468 235 426 236 422 237 461 238 476 239 475 240 429 241 445 242 445 243 431 244 430 245 396 246 461 247 412 248 443 249 424 250 180097