#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_B02.hs38DH/LP6005441-DNA_B02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_B02.hs38DH/QCmetrics/LP6005441-DNA_B02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 34.993 10.867 35 5 0 0.016201 0.0017362 0.039715 0.0062385 0.013976 0.077866 0.99866 0.99623 0.9932 0.98832 0.97519 0.92556 0.77447 0.24155 0.026551 0.0076424 0.0052703 0.0039488 0.003111 0.0025489 0.99737 26 coverage high_quality_coverage_count 0 3670699 1 1890554 2 1658172 3 1581257 4 1559629 5 1559348 6 1579161 7 1634067 8 1709369 9 1835866 10 2003971 11 2242318 12 2574865 13 3008926 14 3574457 15 4332390 16 5326301 17 6698956 18 8572299 19 11156524 20 14679787 21 19414163 22 25613816 23 33485886 24 43188876 25 54724773 26 67903046 27 82365379 28 97523446 29 112668325 30 127002615 31 139641580 32 149779545 33 156791368 34 160249300 35 159997993 36 156117266 37 148932750 38 138997033 39 126947360 40 113552242 41 99552210 42 85594369 43 72197231 44 59744566 45 48625353 46 38908681 47 30641109 48 23782695 49 18211009 50 13792613 51 10349267 52 7706896 53 5722959 54 4257740 55 3187918 56 2416211 57 1865713 58 1468200 59 1193912 60 998712 61 859934 62 758879 63 682150 64 626805 65 583699 66 544887 67 512435 68 486823 69 463994 70 441871 71 421891 72 403049 73 385577 74 367837 75 352638 76 336716 77 321512 78 307393 79 293019 80 279060 81 267696 82 254969 83 243297 84 232908 85 222503 86 213474 87 204190 88 196005 89 188098 90 180846 91 174057 92 167769 93 162412 94 156105 95 150972 96 145763 97 140382 98 135850 99 130622 100 126669 101 123035 102 118709 103 115258 104 111109 105 107328 106 104094 107 100444 108 97869 109 94233 110 91838 111 88522 112 86947 113 84664 114 81596 115 79098 116 76884 117 75373 118 72808 119 70570 120 68860 121 67484 122 65669 123 63665 124 61911 125 60177 126 58831 127 57104 128 55988 129 54633 130 52755 131 51724 132 50788 133 49207 134 48108 135 46931 136 46290 137 45013 138 44537 139 43567 140 42742 141 42062 142 41109 143 40357 144 39223 145 38491 146 38015 147 37555 148 36503 149 36291 150 35674 151 35104 152 34429 153 33952 154 33474 155 32984 156 32665 157 32441 158 31385 159 31182 160 30626 161 30220 162 29671 163 29505 164 28990 165 28378 166 28386 167 27796 168 27383 169 26877 170 26261 171 26119 172 25954 173 25486 174 24776 175 24694 176 24289 177 23658 178 23334 179 23091 180 22502 181 21899 182 21795 183 21554 184 21649 185 21108 186 20743 187 20329 188 19884 189 19839 190 19549 191 19187 192 18943 193 18290 194 18349 195 17678 196 17538 197 17351 198 16844 199 16717 200 16480 201 16134 202 16079 203 15835 204 15382 205 15157 206 14665 207 14513 208 14369 209 14189 210 14032 211 13557 212 13692 213 13443 214 13165 215 13196 216 13158 217 13027 218 12601 219 12539 220 12589 221 12381 222 12000 223 11912 224 11792 225 11601 226 11481 227 11523 228 11257 229 11032 230 10767 231 10963 232 10617 233 10492 234 10497 235 10485 236 10266 237 9955 238 9967 239 9991 240 9787 241 9634 242 9691 243 9439 244 9572 245 9484 246 9195 247 9227 248 9080 249 8953 250 1750242