#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005441-DNA_B07.hs38DH/LP6005441-DNA_B07.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_B07.hs38DH/QCmetrics/LP6005441-DNA_B07.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 34.31 8.0983 34 5 0 0.016459 0.0012572 0.035903 0.006626 0.00010002 0.060345 0.99942 0.99756 0.99367 0.98691 0.9709 0.91591 0.75901 0.23052 0.01965 0.0024774 0.0013376 0.00086862 0.00060143 0.00044886 0.99834 28 coverage high_quality_coverage_count 0 87740 1 58956 2 66121 3 74232 4 84825 5 95545 6 105043 7 117000 8 130434 9 143743 10 159311 11 176716 12 199982 13 227392 14 264096 15 310428 16 372198 17 455333 18 570467 19 726343 20 938566 21 1219668 22 1580679 23 2037319 24 2589289 25 3236511 26 3959497 27 4748318 28 5561473 29 6361080 30 7110792 31 7769216 32 8290753 33 8629425 34 8783176 35 8744609 36 8516903 37 8104955 38 7545875 39 6894760 40 6169762 41 5403060 42 4645578 43 3917392 44 3247569 45 2643039 46 2115754 47 1665914 48 1287571 49 980914 50 733889 51 545582 52 400729 53 290839 54 207465 55 149500 56 107434 57 77566 58 56574 59 42586 60 32577 61 26000 62 21454 63 18327 64 15878 65 14007 66 12579 67 11606 68 10762 69 10203 70 9347 71 8597 72 8195 73 7748 74 7173 75 6751 76 6344 77 6086 78 5713 79 5378 80 5170 81 4901 82 4557 83 4372 84 4038 85 3973 86 3659 87 3474 88 3329 89 3171 90 3018 91 2678 92 2561 93 2419 94 2320 95 2282 96 2206 97 2050 98 1872 99 1802 100 1745 101 1649 102 1523 103 1516 104 1493 105 1448 106 1321 107 1315 108 1308 109 1296 110 1275 111 1205 112 1164 113 1193 114 1186 115 1134 116 1090 117 1104 118 994 119 953 120 963 121 971 122 874 123 877 124 895 125 822 126 767 127 731 128 748 129 687 130 674 131 602 132 591 133 605 134 589 135 512 136 535 137 558 138 510 139 491 140 482 141 465 142 457 143 438 144 442 145 417 146 415 147 394 148 468 149 450 150 409 151 384 152 400 153 361 154 365 155 357 156 341 157 376 158 347 159 350 160 329 161 331 162 330 163 320 164 314 165 339 166 355 167 314 168 339 169 284 170 282 171 254 172 284 173 234 174 267 175 263 176 213 177 211 178 220 179 235 180 204 181 201 182 191 183 204 184 186 185 205 186 209 187 205 188 193 189 193 190 158 191 158 192 139 193 157 194 139 195 144 196 153 197 162 198 148 199 146 200 149 201 167 202 162 203 148 204 154 205 134 206 137 207 139 208 138 209 127 210 138 211 118 212 146 213 143 214 127 215 122 216 117 217 113 218 91 219 103 220 89 221 107 222 110 223 100 224 109 225 87 226 106 227 110 228 108 229 109 230 102 231 103 232 99 233 89 234 97 235 110 236 85 237 99 238 89 239 103 240 105 241 91 242 96 243 95 244 75 245 101 246 83 247 89 248 84 249 82 250 5448