#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_B09.hs38DH/LP6005441-DNA_B09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_B09.hs38DH/QCmetrics/LP6005441-DNA_B09.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.4027	17.16	0	0	0	0.053991	0.0078245	0.054037	0.024972	0.33445	0.47528	0.15129	0.068631	0.03799	0.025166	0.019037	0.015657	0.013624	0.011218	0.009794	0.008831	0.0081007	0.0075225	0.0070362	0.0065777	0.10955	1	

coverage	high_quality_coverage_count	
0	20060416
1	883279
2	471766
3	337227
4	261483
5	208392
6	166123
7	138767
8	114930
9	96023
10	80837
11	70423
12	59366
13	49966
14	42519
15	37464
16	32498
17	28034
18	24813
19	22062
20	19416
21	18043
22	15570
23	14192
24	12672
25	11391
26	10485
27	9616
28	8624
29	7948
30	7434
31	6705
32	6422
33	6050
34	5628
35	5502
36	5152
37	4937
38	4701
39	4334
40	4214
41	3874
42	3610
43	3321
44	3349
45	3198
46	3154
47	3055
48	3018
49	2858
50	2585
51	2448
52	2505
53	2373
54	2343
55	2230
56	2146
57	2137
58	1936
59	2058
60	1919
61	1867
62	1838
63	1773
64	1650
65	1738
66	1646
67	1610
68	1644
69	1577
70	1518
71	1439
72	1431
73	1366
74	1361
75	1359
76	1305
77	1274
78	1325
79	1289
80	1226
81	1230
82	1150
83	1229
84	1145
85	1105
86	1103
87	1109
88	1109
89	1088
90	1200
91	1171
92	1066
93	1091
94	1072
95	1125
96	1019
97	1048
98	1039
99	1007
100	946
101	959
102	930
103	969
104	937
105	1003
106	1002
107	961
108	1033
109	1044
110	981
111	980
112	928
113	929
114	888
115	853
116	910
117	835
118	890
119	848
120	821
121	844
122	881
123	803
124	794
125	789
126	806
127	802
128	844
129	851
130	837
131	844
132	831
133	811
134	757
135	777
136	754
137	745
138	754
139	747
140	754
141	724
142	753
143	775
144	769
145	801
146	767
147	746
148	730
149	742
150	822
151	730
152	774
153	686
154	753
155	720
156	739
157	746
158	792
159	790
160	858
161	795
162	770
163	785
164	784
165	795
166	752
167	753
168	728
169	731
170	695
171	676
172	695
173	682
174	654
175	647
176	614
177	593
178	645
179	653
180	644
181	576
182	644
183	604
184	575
185	633
186	551
187	535
188	557
189	540
190	524
191	541
192	513
193	540
194	508
195	533
196	480
197	520
198	484
199	511
200	573
201	533
202	516
203	519
204	537
205	543
206	496
207	520
208	503
209	536
210	528
211	481
212	489
213	486
214	531
215	484
216	487
217	490
218	469
219	424
220	440
221	437
222	417
223	380
224	417
225	378
226	424
227	346
228	335
229	369
230	347
231	329
232	341
233	329
234	346
235	323
236	391
237	342
238	333
239	330
240	339
241	307
242	292
243	311
244	335
245	318
246	303
247	281
248	297
249	287
250	59554