#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005441-DNA_C01.hs38DH/LP6005441-DNA_C01.hs38DH.cram --algo AlignmentStat SGDP/LP6005441-DNA_C01.hs38DH/QCmetrics/LP6005441-DNA_C01.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	649663158	649663158	1.000000	0	644324372	0.991782	63873171741	599368101	59580723118	55767877872	0.000000	0.005797	0.005202	0.000203	100.000000	641915671	0.996262	0	0.500131	0.019412	0.000035	
SECOND_OF_PAIR	649663158	649663158	1.000000	0	642363831	0.988764	63393170026	596964196	59119546475	54338132576	0.000000	0.007050	0.006457	0.000204	100.000000	641915671	0.999302	0	0.499962	0.019672	0.000586	
PAIR	1299326316	1299326316	1.000000	0	1286688203	0.990273	127266341767	1196332297	118700269593	110106010448	0.000000	0.006422	0.005827	0.000204	100.000000	1283831342	0.997780	0	0.500047	0.019542	0.000311