#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_C02.hs38DH/LP6005441-DNA_C02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_C02.hs38DH/QCmetrics/LP6005441-DNA_C02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 39.463 11.75 39 5 0 0.02026 0.0014407 0.042875 0.0060559 0.013067 0.0837 0.99877 0.99687 0.9946 0.99138 0.98439 0.9629 0.89213 0.47575 0.096493 0.014467 0.0070285 0.0051114 0.0039538 0.0031982 0.99777 27 coverage high_quality_coverage_count 0 3383949 1 1481023 2 1290378 3 1240900 4 1216226 5 1210486 6 1208917 7 1226724 8 1267233 9 1324605 10 1415857 11 1541253 12 1716982 13 1937783 14 2225457 15 2588800 16 3052996 17 3656407 18 4436418 19 5463808 20 6832673 21 8646773 22 11055637 23 14221662 24 18308249 25 23486111 26 29883009 27 37612674 28 46619358 29 56857115 30 68076921 31 80024600 32 92222713 33 104238935 34 115484038 35 125356869 36 133405659 37 139325416 38 142678202 39 143402030 40 141524971 41 137113297 42 130538708 43 122126884 44 112338055 45 101638513 46 90534572 47 79383717 48 68591500 49 58391780 50 49019367 51 40578874 52 33154562 53 26773301 54 21376413 55 16900532 56 13234875 57 10293602 58 7949640 59 6122044 60 4706019 61 3630704 62 2821596 63 2212355 64 1765925 65 1436579 66 1195661 67 1014357 68 879393 69 778632 70 702174 71 642139 72 596605 73 557394 74 524629 75 496694 76 469944 77 447322 78 425348 79 405946 80 387650 81 369103 82 352599 83 337077 84 322627 85 307781 86 294541 87 280866 88 270308 89 258573 90 248075 91 238118 92 227871 93 219295 94 209919 95 201835 96 192885 97 185531 98 179190 99 173450 100 167280 101 162463 102 157520 103 152498 104 148366 105 143613 106 139672 107 135295 108 131776 109 128279 110 124761 111 120685 112 117848 113 113990 114 111805 115 108301 116 104700 117 102030 118 100240 119 97091 120 94913 121 92267 122 89270 123 87051 124 85104 125 82581 126 81024 127 78146 128 76986 129 73915 130 72095 131 69909 132 68420 133 66425 134 64232 135 63087 136 61012 137 59998 138 58511 139 56582 140 55525 141 54197 142 52758 143 51549 144 50258 145 49270 146 48186 147 47019 148 46203 149 45107 150 43723 151 43250 152 42228 153 41263 154 40777 155 39787 156 39171 157 38107 158 37614 159 36715 160 35531 161 34866 162 34481 163 33940 164 33422 165 32320 166 32433 167 31615 168 31320 169 31095 170 29949 171 30049 172 29373 173 28680 174 28456 175 27853 176 27183 177 26720 178 26629 179 25992 180 25515 181 25362 182 24945 183 24706 184 24351 185 23739 186 23748 187 23688 188 22846 189 23024 190 22630 191 22331 192 22196 193 21550 194 21346 195 21360 196 21026 197 20940 198 20351 199 20254 200 19768 201 19776 202 19623 203 18965 204 19223 205 18696 206 18373 207 18083 208 18208 209 17660 210 17698 211 17369 212 17185 213 16599 214 16912 215 16505 216 16212 217 16097 218 15797 219 15595 220 15534 221 15142 222 15087 223 14743 224 14565 225 14377 226 14175 227 14045 228 14175 229 13868 230 13485 231 13445 232 13320 233 12899 234 12951 235 12893 236 12599 237 12605 238 12224 239 12168 240 12090 241 12050 242 11821 243 11662 244 11753 245 11344 246 11307 247 11086 248 11133 249 10778 250 2024690