#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_C02.hs38DH/LP6005441-DNA_C02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_C02.hs38DH/QCmetrics/LP6005441-DNA_C02.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 22.902 24.993 19 3 0 0.052725 0.001379 0.034196 0.0087623 0.30614 0.4032 0.99908 0.99749 0.97952 0.83618 0.48033 0.17795 0.066954 0.034881 0.028151 0.023751 0.020259 0.017701 0.015923 0.014734 0.99662 25 coverage high_quality_coverage_count 0 21771 1 7350 2 7275 3 9341 4 13597 5 22269 6 38900 7 66387 8 112336 9 184877 10 292935 11 448066 12 644736 13 875652 14 1126569 15 1374327 16 1596301 17 1752087 18 1843845 19 1844396 20 1775069 21 1642929 22 1452622 23 1244802 24 1031731 25 830832 26 646816 27 497512 28 373764 29 274705 30 201269 31 146096 32 106467 33 78528 34 59741 35 46592 36 37313 37 31382 38 26922 39 23798 40 21338 41 19425 42 18208 43 16751 44 15598 45 15165 46 14065 47 13273 48 12744 49 12503 50 12037 51 11504 52 11076 53 10622 54 10449 55 10086 56 9775 57 9670 58 9480 59 9297 60 9158 61 8949 62 8865 63 8624 64 8316 65 8149 66 8025 67 7607 68 7464 69 7365 70 7064 71 6716 72 6619 73 6371 74 5979 75 5727 76 5716 77 5602 78 5374 79 5305 80 5082 81 4752 82 4656 83 4444 84 4127 85 4069 86 3891 87 3756 88 3631 89 3622 90 3407 91 3344 92 3051 93 2938 94 2871 95 2746 96 2629 97 2467 98 2376 99 2276 100 2254 101 2196 102 2065 103 1995 104 1894 105 1939 106 1831 107 1848 108 1853 109 1731 110 1759 111 1715 112 1692 113 1634 114 1618 115 1439 116 1455 117 1491 118 1529 119 1436 120 1441 121 1419 122 1416 123 1392 124 1458 125 1420 126 1370 127 1415 128 1363 129 1382 130 1342 131 1278 132 1304 133 1383 134 1279 135 1291 136 1284 137 1280 138 1368 139 1400 140 1368 141 1270 142 1335 143 1305 144 1266 145 1242 146 1236 147 1291 148 1286 149 1171 150 1274 151 1212 152 1230 153 1162 154 1136 155 1209 156 1217 157 1206 158 1127 159 1162 160 1153 161 1112 162 1088 163 1076 164 1152 165 1074 166 1068 167 1064 168 1025 169 1105 170 1053 171 982 172 1026 173 989 174 973 175 999 176 913 177 958 178 895 179 888 180 860 181 873 182 831 183 813 184 847 185 826 186 804 187 743 188 784 189 755 190 816 191 735 192 695 193 718 194 764 195 674 196 717 197 712 198 733 199 742 200 729 201 734 202 719 203 756 204 730 205 726 206 732 207 793 208 719 209 734 210 785 211 706 212 747 213 759 214 725 215 754 216 750 217 683 218 695 219 652 220 666 221 641 222 646 223 592 224 667 225 601 226 614 227 598 228 584 229 581 230 598 231 595 232 587 233 590 234 584 235 588 236 525 237 544 238 571 239 518 240 526 241 511 242 533 243 476 244 537 245 529 246 534 247 504 248 464 249 476 250 193245