#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_C06.hs38DH/LP6005441-DNA_C06.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_C06.hs38DH/QCmetrics/LP6005441-DNA_C06.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 42.974 29.189 38 5 0 0.088736 0.0019966 0.046075 0.0094308 0.28361 0.42985 0.99952 0.99851 0.99687 0.99374 0.98547 0.95967 0.87675 0.44205 0.11206 0.048622 0.038086 0.032986 0.02982 0.027533 0.99895 30 coverage high_quality_coverage_count 0 11265 1 5722 2 5753 3 5662 4 6704 5 6511 6 7319 7 7498 8 8332 9 9191 10 10476 11 11830 12 14136 13 17040 14 20604 15 25445 16 30725 17 36951 18 45920 19 56453 20 69043 21 88803 22 113890 23 147696 24 190221 25 241236 26 304866 27 381236 28 467692 29 564879 30 667925 31 772586 32 877206 33 975288 34 1065006 35 1132571 36 1180207 37 1206749 38 1208807 39 1188458 40 1148938 41 1090978 42 1012781 43 929020 44 832607 45 736539 46 642188 47 550409 48 466514 49 389748 50 323780 51 265622 52 214753 53 173725 54 140202 55 112303 56 89283 57 72213 58 58595 59 49015 60 40687 61 34761 62 30564 63 26784 64 24151 65 21418 66 19934 67 18063 68 16829 69 15833 70 15065 71 14023 72 13224 73 12824 74 12407 75 11862 76 11361 77 10580 78 9784 79 9422 80 9060 81 8546 82 7878 83 7805 84 7598 85 7232 86 7059 87 6812 88 6579 89 6249 90 6252 91 6044 92 5741 93 5549 94 5331 95 5296 96 5095 97 5069 98 4837 99 4842 100 4642 101 4511 102 4562 103 4517 104 4566 105 4460 106 4335 107 4309 108 4235 109 4267 110 4068 111 4125 112 3878 113 3989 114 3873 115 3802 116 3612 117 3592 118 3662 119 3695 120 3624 121 3539 122 3504 123 3531 124 3459 125 3470 126 3463 127 3389 128 3287 129 3321 130 3368 131 3329 132 3263 133 3377 134 3218 135 3279 136 3154 137 3182 138 3293 139 3155 140 3104 141 3160 142 3189 143 3168 144 3112 145 2996 146 3090 147 3065 148 3091 149 3087 150 2912 151 2940 152 2936 153 2875 154 2816 155 2707 156 2816 157 2759 158 2826 159 2751 160 2763 161 2824 162 2714 163 2797 164 2659 165 2663 166 2575 167 2617 168 2550 169 2490 170 2539 171 2525 172 2374 173 2426 174 2366 175 2418 176 2340 177 2395 178 2375 179 2281 180 2248 181 2216 182 2163 183 2014 184 2122 185 2013 186 1999 187 2037 188 1877 189 1861 190 1862 191 1816 192 1824 193 1827 194 1782 195 1757 196 1704 197 1725 198 1691 199 1649 200 1684 201 1661 202 1583 203 1579 204 1660 205 1532 206 1591 207 1539 208 1492 209 1446 210 1424 211 1370 212 1322 213 1312 214 1291 215 1291 216 1302 217 1209 218 1235 219 1239 220 1242 221 1149 222 1197 223 1126 224 1142 225 1121 226 1063 227 1101 228 1035 229 1034 230 963 231 960 232 949 233 928 234 932 235 873 236 877 237 892 238 833 239 885 240 783 241 809 242 792 243 861 244 769 245 785 246 797 247 738 248 749 249 724 250 295736