#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_C07.hs38DH/LP6005441-DNA_C07.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_C07.hs38DH/QCmetrics/LP6005441-DNA_C07.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 40.217 12.402 40 5 0 0.021337 0.00088504 0.044239 0.0058209 0.016478 0.08876 0.99881 0.99703 0.99497 0.9921 0.98631 0.96961 0.91121 0.50979 0.10453 0.01566 0.0081708 0.0062522 0.0050164 0.0041577 0.99786 27 coverage high_quality_coverage_count 0 3281155 1 1451107 2 1213434 3 1128341 4 1096677 5 1083629 6 1090636 7 1113212 8 1154229 9 1211590 10 1287714 11 1394719 12 1535716 13 1713314 14 1941880 15 2228802 16 2597200 17 3056315 18 3639274 19 4393446 20 5384683 21 6729397 22 8549123 23 10997008 24 14242882 25 18496367 26 23935431 27 30703800 28 38880109 29 48461733 30 59359496 31 71324594 32 83997390 33 96858370 34 109387198 35 120920980 36 130950570 37 138920170 38 144378838 39 147001520 40 146802072 41 143752926 42 138142580 43 130361194 44 120775301 45 109964325 46 98420977 47 86589297 48 74942983 49 63881676 50 53608838 51 44328908 52 36154460 53 29088149 54 23118996 55 18170898 56 14134781 57 10896855 58 8343603 59 6360407 60 4846695 61 3702549 62 2846912 63 2214556 64 1751948 65 1419024 66 1173741 67 995453 68 864371 69 765863 70 693325 71 636166 72 592645 73 555151 74 522716 75 497714 76 472377 77 452571 78 433371 79 416202 80 400978 81 385379 82 371908 83 357725 84 344191 85 330303 86 319225 87 306768 88 295252 89 284271 90 274359 91 264594 92 256096 93 246932 94 238895 95 229866 96 223188 97 215824 98 207575 99 202124 100 196959 101 190539 102 185801 103 180153 104 175373 105 171947 106 166721 107 162730 108 158750 109 154268 110 150986 111 146910 112 143228 113 140791 114 136623 115 133225 116 129889 117 128230 118 125130 119 121476 120 118655 121 116008 122 113136 123 110380 124 107939 125 104461 126 102345 127 99421 128 97099 129 94839 130 93418 131 90434 132 88628 133 86373 134 84073 135 81800 136 80038 137 78597 138 77401 139 75433 140 73616 141 72188 142 70989 143 69318 144 68022 145 67247 146 65649 147 64653 148 62776 149 62217 150 60936 151 59717 152 58900 153 57901 154 56817 155 56267 156 55557 157 54645 158 53980 159 53706 160 52639 161 52162 162 50728 163 50237 164 49714 165 49290 166 47919 167 47562 168 46775 169 46068 170 45332 171 44320 172 44335 173 43206 174 42521 175 42080 176 41705 177 41120 178 40419 179 40197 180 39113 181 38489 182 38201 183 37726 184 37255 185 36497 186 35628 187 35534 188 34819 189 34589 190 33678 191 33387 192 33048 193 33112 194 32118 195 31505 196 31130 197 30374 198 30314 199 29521 200 29149 201 28731 202 27956 203 27667 204 26931 205 26663 206 26360 207 25663 208 25857 209 25643 210 25027 211 24723 212 23961 213 23898 214 23017 215 22940 216 22862 217 22367 218 22107 219 21879 220 21337 221 21372 222 20925 223 20556 224 20108 225 20036 226 19742 227 19447 228 19156 229 18865 230 18819 231 18401 232 18115 233 18173 234 17912 235 17754 236 17365 237 17276 238 17162 239 16586 240 16741 241 16419 242 16716 243 16224 244 15862 245 15940 246 15631 247 15667 248 15656 249 15270 250 2532997