#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005441-DNA_C07.hs38DH/LP6005441-DNA_C07.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_C07.hs38DH/QCmetrics/LP6005441-DNA_C07.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 20.105 6.0342 20 3 0 0.012649 0.00098343 0.041185 0.0057353 0.00026718 0.06082 0.99893 0.99616 0.98226 0.86623 0.52408 0.18094 0.040372 0.0055924 0.0024128 0.0012204 0.00070446 0.0004344 0.00029567 0.00021872 0.9962 24 coverage high_quality_coverage_count 0 163139 1 91690 2 94283 3 107098 4 127868 5 159140 6 217775 7 333457 8 532905 9 870523 10 1406885 11 2193704 12 3267211 13 4611501 14 6171038 15 7825657 16 9422940 17 10784165 18 11757358 19 12255466 20 12222925 21 11682898 22 10729567 23 9479090 24 8082283 25 6653934 26 5296237 27 4096392 28 3078986 29 2257106 30 1613315 31 1135807 32 789395 33 544670 34 379178 35 269922 36 197851 37 149405 38 116048 39 94848 40 79488 41 68202 42 59948 43 52907 44 46934 45 42874 46 38679 47 34784 48 31520 49 28326 50 26257 51 23999 52 21773 53 19886 54 18623 55 16873 56 15215 57 14110 58 12809 59 11830 60 10884 61 9905 62 9072 63 8567 64 7802 65 7390 66 6807 67 6251 68 6014 69 5794 70 5514 71 4993 72 4843 73 4463 74 3988 75 4010 76 3703 77 3332 78 3115 79 3119 80 2762 81 2653 82 2441 83 2298 84 2181 85 2036 86 1801 87 1782 88 1637 89 1511 90 1488 91 1412 92 1327 93 1231 94 1178 95 1141 96 1108 97 964 98 959 99 898 100 848 101 878 102 823 103 758 104 748 105 694 106 696 107 688 108 614 109 657 110 674 111 642 112 640 113 617 114 529 115 517 116 454 117 449 118 479 119 462 120 445 121 401 122 406 123 371 124 368 125 390 126 385 127 386 128 335 129 294 130 270 131 296 132 320 133 274 134 251 135 281 136 249 137 272 138 265 139 277 140 224 141 225 142 216 143 201 144 207 145 173 146 195 147 181 148 160 149 161 150 184 151 163 152 170 153 167 154 130 155 170 156 142 157 155 158 144 159 174 160 139 161 125 162 135 163 129 164 127 165 136 166 138 167 128 168 112 169 124 170 111 171 110 172 100 173 121 174 118 175 123 176 123 177 116 178 107 179 115 180 131 181 91 182 97 183 95 184 108 185 96 186 98 187 89 188 87 189 73 190 82 191 82 192 88 193 100 194 70 195 84 196 73 197 64 198 55 199 64 200 86 201 80 202 67 203 81 204 63 205 74 206 65 207 62 208 62 209 64 210 62 211 72 212 73 213 44 214 38 215 58 216 41 217 45 218 41 219 54 220 52 221 47 222 46 223 50 224 43 225 46 226 38 227 45 228 48 229 39 230 44 231 40 232 31 233 28 234 47 235 39 236 33 237 47 238 24 239 33 240 36 241 22 242 35 243 29 244 39 245 26 246 26 247 18 248 31 249 20 250 3827